Basic Information | |
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Taxon OID | 3300031802 Open in IMG/M |
Scaffold ID | Ga0310123_10021302 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4613 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Western Arctic Ocean | |||||||
Coordinates | Lat. (o) | 74.6947 | Long. (o) | -146.6612 | Alt. (m) | Depth (m) | 800 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F049037 | Metagenome / Metatranscriptome | 147 | N |
F049696 | Metagenome / Metatranscriptome | 146 | N |
F060975 | Metagenome / Metatranscriptome | 132 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310123_100213021 | F049696 | GAGG | MSGLELKPMKIHTQKGKRRLWLEQQRYGLDGFAPGSSFKVTYHTDSIEIEADPEGSNKVFTRVKKASKLHPTERQFAIVSLHNSKLKAIFGDTDDGVDTPCRYEQMPGYLKIWPVEAVAVEQVYAEAA |
Ga0310123_100213026 | F049037 | GGAG | MSESPCDTCHNYWLCMEGARACSDFKLFYDTGKITHHDRSPNWYIDMPPMSITVRELSDICGFGKETNKLKHWLGLKVYRLIEDPLGFIFLRHLDDKIEDLHEGKSSKRLRYAKAACRKVVLDAKVRESSTRSQDNVGGVVRREMGRTITTLCSNEDSSEEKQGKWVKLSETIW |
Ga0310123_100213027 | F060975 | AGGAG | MGKTIRNNLVAKNSEKFNKPKTVRDRKKDYYRPDVKREFEEAIEDMGFDEYNKKEAIITQYQEDQARSQEDGWPYED |
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