Scaffold Ga0310123_10020255

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10020255
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4744
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007550	Metagenome / Metatranscriptome	349	Y
F011494	Metagenome / Metatranscriptome	290	Y
F014551	Metagenome	262	Y
F047110	Metagenome	150	Y
F058213	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_1002025512	F007550	N/A	MVAVGLDGSIDGWGYRAFLKFVMKKIIIFLLVCIASTNAATLELKVNNQKVLPNGKAYGLESGIYFELTNLEPFVMYKLQYSEDLKKWTDMVHLGTYQMAMTSPYWTWKELPPVKCFFRIVVAW
Ga0310123_100202552	F058213	N/A	MICYECGTKAQRREIRTAKKEMREPQISIKCGSWEKGQCEKCKKKKVYVTPFSDFIIVSA
Ga0310123_100202554	F011494	AGGA	VNEEGVVEEFVQLTGEADHAALNDAIELAGRAGEDVVEHFADGSRVVVWELAGEEPWEGEDRFADGDALASAGFGTDEDYGCFDAGDEW
Ga0310123_100202555	F047110	N/A	MKTVVSINWRIRDLIREKLSFARWHKTVYGRAASRKVLSEIKAKGEELEQMKAAVILAAMDEAAT
Ga0310123_100202557	F014551	N/A	MRDMFKFQYNPARHNGEVNHAGEVFDYVGVIVDKFENQTEGEDFSGVTVELYDNEGPTGQTRRFRWDRMIGAENIINKAQAMHGGRI