Scaffold Ga0310123_10018820

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10018820
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4932
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003827	Metagenome / Metatranscriptome	466	Y
F025767	Metagenome / Metatranscriptome	200	Y
F076174	Metagenome / Metatranscriptome	118	Y
F078823	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_1001882012	F076174	AGGAG	MTVIMPAIEKFQIKTPDQKTVISEHGPEELEELRKQIEGTDNIIQYVFKEIKEDDS
Ga0310123_100188202	F025767	GGA	MEYLMVNPVTGEAEDITCTVADMEVLKQEGWVMVFTPNKNSIISGRDTSGQGGGHATSDGWKDTLRRIKANNPESVIDV
Ga0310123_100188205	F003827	AGGAG	MAEGRWADWQVRLIAENMATKRPKRDWFEDEGNQEGYLTSLKSWSHITARQLYSMELEERQMIIFIHHMGIEHVGVQTFDPQDTRQYSDYVPSEGEVPWVHPGNAPPLDIKLKNT
Ga0310123_100188207	F078823	AGGAG	MIDERPYGPEIEELHEAVMEVIGDYIDFEYSFEHNEIEGNADEETLTLWEGKGLFEVTIERGYKQRADGPDMNYQGTHIEGDYDAYVTWLKEKWPGVYEEALGEWKMTNADRITDEDKAVIENRITDEDKAVIENG