Scaffold Ga0310123_10006093

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10006093
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8964
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024812	Metagenome / Metatranscriptome	204	Y
F060027	Metagenome / Metatranscriptome	133	Y
F101907	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_1000609312	F024812	GGA	MATKNNFSHGTNTELEGVETSSFTVDFVNTMASETSDLSAGSATAGLEAVRSVIGRYVNILSEGPLVDSGKQKTYTVRTDTLGTIISAGTLQTDIRALNGAGNVTATISSAVVTATDIGILLAAVV
Ga0310123_1000609314	F101907	AGGAGG	MAYDSTIPAGGHANYVSPNTAHEGEGVAVDFITVDLLATATGEVTHPYASAATGGLHMIRECFANNGVNILGNGVITAAHEHTFMVRRDNLDTISSTTTVAAIQAALRALDALTPDKITLTMTSVTAADRDMGKLTAMA
Ga0310123_1000609316	F060027	N/A	ILLRGTILYQRIDNAASGRIDISMERPGWTAATLQTAIRDMGTTVGVNNKDVSLSVVAQTELKLDNS