Scaffold Ga0310123_10005914

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10005914
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9109
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038405	Metagenome / Metatranscriptome	166	Y
F039339	Metagenome	164	Y
F079215	Metagenome	116	Y
F105337	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_1000591412	F039339	GGA	MLTVESVAHVASGMGLVLEKRVIIRDDITYRYTLYDNNKFVEDFFETLAQAWSYIYYYDDEGARV
Ga0310123_1000591413	F038405	GAGG	MRITGQALNQLRPLLTKALQTGAEVSFMYHDKRRNGPLKDFGWGPAGPFITIEHKKYSLGLQDQNELLENGSTKPGYQTEIKSFSLAKMSELRVEQFVGTE
Ga0310123_100059146	F105337	AGAAGG	MARRRIIKRKGADKFSGRKIRPKNVIAVGFEIVHKITHKRWLTVSNVRPQRMLDLMSQYNRGRYGWAQVRVKVKAYKEGCKVKRSKTGEVHGIVK
Ga0310123_100059149	F079215	GGA	MQNLHRAIVSIPSDRDARPIDNFEHLTISYGRHSWAVKVPKGEFAQAHLEVTRKAEHDGMEDD