Scaffold Ga0310123_10005412

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10005412
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9563
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (38.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007837	Metagenome / Metatranscriptome	344	Y
F013596	Metagenome / Metatranscriptome	270	Y
F055296	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_1000541213	F007837	N/A	VIDLKTTINPLIVNYAAQYQSLSNSIIIDNQDAANAVTVRLNRSTNTITIAGGNFRTFNDAWIEQIDCTGASTNTQVTSQISPLTQISPYGQGVTN
Ga0310123_1000541216	F013596	N/A	MEAFIPFLTILAIVLPVCLTGLFVAKIWRTNAILDPKITKKLDSHRQQYTEQLEKEKRSLQNKLNSMQKGPELSEIGELDGVLPDLIGQLDGILPKWATKFIKGQPDLVNTVIEYAKSNPDKAKELIGRFVKIKPTTKSPSDDSMQGL
Ga0310123_1000541217	F055296	N/A	MVIDSKLRSFQVENMAKYDKFREIQQSRNKKIGQRLNELIEKEVKEADPQFKELTPIRSKDAPDIIIPNPFVLDQFHSLPKWEEYLRTLTKAEHEILYRHILALKLVTNDFEDHRLD
Ga0310123_100054128	F013596	N/A	MEAFAQSLTILSIVVSMSVCAVLIARIYRKNSALDPKITNKLRKQQEEYIGEVERKNRSLQNKLNSMQKGPELSEIGELGGVIPDLIGQLDGILPKWATKFIKGQPDLVNTVIEYAKSNPDKAKELIGRFVKIKPATKSASDDSVQGL