NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10155788

Scaffold Ga0310121_10155788


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10155788 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1420
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F002744Metagenome / Metatranscriptome533Y
F031891Metagenome / Metatranscriptome181N

Sequences

Protein IDFamilyRBSSequence
Ga0310121_101557881F031891GAGLVSEFIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFRQTNLTRKKAEGSGHTDGQIDDLINNAPRILNEINKTIAEQK
Ga0310121_101557882F000704AGGTGGMPHARSEIQPSNVKAIPTYGIDAYGEDLFLPFTDVGLTETALVFSTAVVTRDVEDSNQPMDDFPAVYSDTDAGLLLNEGNDTAFSQTYSFVPDMTAIIYAIHLVFPALVTCSAFTSGTLNVGALHIKITERSTNNRLLYENTFQSGAANLTGTGTSLHFFQRDIVETIKVEKGNPIDILVELVTVITGTNTRQEGYCGLAPYLKTAVLKRFTPAGMALHLHADLSHADGVFKYKKDRVSMLGQ
Ga0310121_101557883F002744N/AVIYDTESTNGAEQYYTRPTNETAAATAVDTRTEGGSMTIQGGNEITGLYTVVSGATATASQHDVGYSEFLSPDFNTSMPYRVAVQPTYTGLGSAAGATTGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYSKN

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