Scaffold Ga0310121_10138984

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10138984
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1523
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000782	Metagenome	894	Y
F012880	Metagenome	276	Y
F035080	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_101389841	F000782	N/A	LFMTKTEFKDTVKGIFSVRWLKNDGELGYIHRGILGLNKKVDGQPNEHNDYVLVYKLGNGYGTQRRWGNVNPNTVTHINGVAV
Ga0310121_101389842	F012880	GGAG	MKFNIVTFIWSTALVLLTFQFCLLWIDWGFTNTFVYKFMLLLDGFMFGLVISDWSNN
Ga0310121_101389843	F035080	GGAG	MPNNLITHNKVDITPLVKELVEYVKDQKAVGDLEQLCSKIPMTNSPDWKLISGVLCNSIVEWASQNSNKGGKELIQHLQSDIGYLLKRMGLTQ