NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10112820

Scaffold Ga0310121_10112820


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10112820 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1729
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043987Metagenome / Metatranscriptome155Y
F054107Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0310121_101128202F043987GGAGMNKGYLKVPAEHLWILAKRDKLGLLTELKRRVEILE
Ga0310121_101128205F054107GAGMKKEKPEPKVNAAAGNFVNAVQTGLTEMNKRLQDMEQKVQEKDKLLNDMAMALKSQQDVLVNAPPQEVQGSEAERNQPMTKGDFFQIIKDGIQLLRQQTQGVDPRIERAIDMQDKLVDAMWEKMARALISDKDAAPGVS

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