NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10097366

Scaffold Ga0310121_10097366


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10097366 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1892
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001494Metagenome683Y
F001955Metagenome612Y

Sequences

Protein IDFamilyRBSSequence
Ga0310121_100973664F001494GAGGMKRKNQDPVKEFQKQCVDQRIDLFYVADRVKGILECKTDAKLRDELEEFKDECVHNIGTNALIERYEY
Ga0310121_100973665F001955N/AMIKELKTLLQKYFGISSPKPIETKKSTPAKVVRPREKLSSLVEEIGKDMFGVRVRVEWGRCPYCESVTQMLSTQVGYFRCSTCRELTRQYVNGHIAYLPIDGGPEPLDYTPKDG

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