Scaffold Ga0310121_10069469

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10069469
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2320
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006865	Metagenome / Metatranscriptome	363	Y
F010325	Metagenome / Metatranscriptome	305	Y
F013774	Metagenome / Metatranscriptome	268	Y
F029469	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100694692	F006865	GGAG	VGKIGKIIKIRDVLYEVLGIMNVERSNDKGTEYWKERWGSDSVLRNGNDYYYCRVIINAEFEDI
Ga0310121_100694693	F029469	AGGAG	MSSKPEHTSYFEEIIRRLKEMEVEFGKAPKRPDDKIYGELDDKIELLELPFPPEMFDRLSSDEKETLFIWLNRRNMPQA
Ga0310121_100694694	F013774	AGG	LNDKLLELKRKKLQRQILYLRTELEETTFIFQDSLIEFEDEFRDYFKDQSKKDHKKVTMDPPEFDIPKEDVKNVFKKIAQKTHPDKLIKEDTLSSTYKEKVDMYKEALGAVENRDWSRVIEIAMELGIDVSDVKNDDSDYLHESIKALTEKIKELKSTYAWAWYHTEDKDQAKQMILQSLGLNKEKENGNTR
Ga0310121_100694696	F010325	AGGA	MLRKQLVSEKLDQLQLAVDRLKSSLVIPTDPGDVVTPTEVIIQQLQVIENQIDQIVNLIELEDD