Scaffold Ga0310121_10069406

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10069406
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2321
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F054103	Metagenome / Metatranscriptome	140	Y
F064802	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100694061	F001066	N/A	VAEDIFKIQPVGNKSLVVENKHKTISPFNSAKHLKTANLPALCNQCVYRSVEDGGNGKCPKYEEGAVCAIRDDFINMINTLDTRNPEDLKSMMDMLAKLSFENVLMALTQAKMDGNIPDRNTKSEVNTLLAIVKSINDLNSKIVVTEKTEYRQGDIENIFRQIK
Ga0310121_100694062	F054103	AGTAG	MKIYFNANNKATLEALERCGVRNVLLSHRYSYANINKFKSKFDSIFIVPGTKGNPDKYHEFLKKKREYYDYATQFDVFYNMDETLKYLEKERKDGIDWTLPILQENYLQHISRLRPKTGDYICIGEVHGKLETEDQIRKLPQNVEYHGLAKGKYIEKRPFKSLDTSGWISAAMSKKTEVWSGNSTFSLFFGDKGRGMKSQVASTLERFSEYLETVGINSRSVLENDYYSLLKLPMAVLYMPMCKSLGIYDINFKQ
Ga0310121_100694063	F064802	GAG	MKTEESVRDLILFQKEKLLHENVDPTGMLPQTLIPPPLIDIPDDERRGVIKALRWVVADEDIFQRE