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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031801 Open in IMG/M |
| Scaffold ID | Ga0310121_10056629 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2619 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Western Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 73.0038 | Long. (o) | -140.0007 | Alt. (m) | Depth (m) | 486 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000567 | Metagenome / Metatranscriptome | 1020 | Y |
| F009536 | Metagenome / Metatranscriptome | 316 | Y |
| F013896 | Metagenome / Metatranscriptome | 267 | Y |
| F019487 | Metagenome | 229 | Y |
| F045144 | Metagenome / Metatranscriptome | 153 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310121_100566291 | F019487 | N/A | MMNNKDIKEFHDLDQLKQYNPLPSGLTVADSGISGQGLFTTR |
| Ga0310121_100566292 | F045144 | GGA | LTWGKGLYYHLNRTGKSLRKYPDGEDPLKQELFGKTRLCTRCNKRKSTLKFHWKTDYTNSNKVIKRLQRFCGVCRVKQDNDKYSASPDAYIRRRIQMLRQDCHRHRGRKKVQLSYDKFFKIWKTQFAKTGLTCPLSGETMTHQRGKGEVLTNISVDRIDSDKEYERGNIQFVCLMANLMKHKYNNKNLLSWSKKIVNNLEKNA |
| Ga0310121_100566294 | F013896 | GGTGG | MICDECNGNGFIIVKGETIQCKKCKSQGEIKETLKPPKYLEEDLSKIYQTLYETSLKLSGDNDPGIVAASLMAIGSRIYKTILTSDDYDNIMEKILKTDVEPFKKETLQ |
| Ga0310121_100566295 | F000567 | N/A | MKETLLKLTQKITTWHERMFKYLTLKSKTSIFFTWLLVFLCLYEIFEHIIIPLALIWWGF |
| Ga0310121_100566296 | F009536 | N/A | MKQALDLMSGKLKEEIKNNLENSKSYTRLFVKICEEIDSMKVVIPKYTALKNAILRINKEAHSKITTEIKHAVPKTKSTISVRDIEIWLLTAKKRDQLIYHTGSTFDRKNHQEETVFRKARNLAFEYDNVPFKDKKYQYRGFSRGEWGCNYTDSITLVQKRVAKEQREKIWNEEEKKYVPGNIISYPLYNYIMIKI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |