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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031801 Open in IMG/M |
| Scaffold ID | Ga0310121_10046755 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2933 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Western Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 73.0038 | Long. (o) | -140.0007 | Alt. (m) | Depth (m) | 486 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000567 | Metagenome / Metatranscriptome | 1020 | Y |
| F009536 | Metagenome / Metatranscriptome | 316 | Y |
| F013896 | Metagenome / Metatranscriptome | 267 | Y |
| F045144 | Metagenome / Metatranscriptome | 153 | Y |
| F080498 | Metagenome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310121_100467553 | F045144 | GGA | LTWQKGLYYHLNRTGKYLRKYPDGKDPLKQELFGKTRVCTKCKKRKSTLKFHWKTDYSYKDKVTKRLQRFCGACRVKHDNDKYSASAGAYLRRKILNLQQDCHRHRGRKKVQLSYDKFYNEWKKQFNKTGLICPLSGETMTHSLGNGAVLTNISVDRIDSDKDYTRGNIQFVCLMANLMKNKYNNKTLLGWSKKIVTHLENQ |
| Ga0310121_100467554 | F080498 | N/A | MIKKIIIYHLLLFFVVLLFSCAPRMHNVAPKPVEKDNQFMTQLLRNIITQGMDF |
| Ga0310121_100467555 | F013896 | GGAG | MICDKCNGNGFTLVKGETVQCKKCLSSGELPETITPPKYLDDDLTHVYQTLYEESLKLSGDNDPGIVAASLMAIGSRIYKTILTPEDYDRMMEKILKTDVQPFKKETLQ |
| Ga0310121_100467556 | F000567 | N/A | MKETLLKLTQKITTWHEGMFKYLTLKSKTSILFTWLLVFICLYEIFEHIFIPLFLIWWSL |
| Ga0310121_100467557 | F009536 | GGA | MMSSKEVMKQALNLMSGTLKEEIKNNLENPKSYTRTFVKICGEIDSMKVKLPVFTALKNDILKINKENHSKITEEIKYSVPQSQSTLSVKDIERWLETAKKKDQLIYYTGRTLDHPKSVKEEAVFRKARNLAMEYDNVPFKNKKYQYRGSVRGEWGCTYKNIITLVQKKVANLQRDTMWDEDKKKYVPGNIISYPIYNYIMIKI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |