Scaffold Ga0310121_10039035

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10039035
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3265
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002330	Metagenome / Metatranscriptome	570	Y
F011970	Metagenome	285	Y
F025049	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100390352	F002330	AGGGGG	MLQFPINNIILDIMLKQIKQINKTLKIGDKFTIYYAPTYTKDGQEQTTIYEPYQYEVNVRSAIWDEKCKINKTGSLTYFDVEKNSHRTAIQTLQAVRIYINKTMYVWNESK
Ga0310121_100390353	F011970	N/A	MKVNNMPNNKVWLVIEKNVYGDTQSFSVVKNHKNIDEAMKYKLCLEKLNDRKGQSYFLASDVDNVLENVAYHHNKSVENGSYYENHPEVKRPEEKILGTI
Ga0310121_100390355	F025049	N/A	LLPQLSNIIYDMQTKGIKQKEYETEVVKRKQGIENARDERELRESQDQRQNSFVTNFESGELVH