Scaffold Ga0310121_10033859

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10033859
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3561
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005948	Metagenome / Metatranscriptome	385	Y
F073660	Metagenome / Metatranscriptome	120	N
F084350	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100338591	F005948	N/A	KRSSCLHRSVSKPYIGLLNIIDMVELNHNIVSFNSDTLIKGSHGVLVAVFVTKKGSGTNKVEFRNGTTASATPVECSIFTAIEGNYQNIHRRFENGIFADCDGSAEVTVVFK
Ga0310121_100338594	F084350	GAGG	MGIAIYDTIDDVISMIKTKWNTSTGGVIPRIERIWDEKTIGLGDMEISKGIILIEAMDETVKYFSLYGSDHMHTIDLTLDVRSYQNIDRHNVIMNELARIIKDQIRRDGFVDLRIVGTIPLSRLYRNMFRHMIRVTFRKMNP
Ga0310121_100338596	F073660	N/A	MVLQSFNIKFKGVDHPIEFEDDMEFGKFEQIIQKCSNFGEGSNPVDNVQNYRREIMLNSIKKAPFEISESGLNGLGYKTVSLIADKILDAYPLGSYLS