Scaffold Ga0310121_10026508

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10026508
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4126
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002667	Metagenome	539	Y
F075462	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100265081	F075462	N/A	MTLDPDYVTKAERERRQQTAQKETKVAKTISIPISYWALLDQVKNKLGKKNVNETLMYCI
Ga0310121_100265082	F002667	N/A	VEIEVLSASLILVASLCGGMCAVFIARSKSTVNKHSRQRIKDFEADIQYLADSKKEEAKEYRQEILRLKSSVNRIKEGTTVTETDMKNSGLGEVIMQLIPNKYRKAASFLVPQVEEAVKKDPAIVERIYEKIKSANTSNKEAQTGAEAQASTSL