Scaffold Ga0310121_10025535

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10025535
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4223
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004843	Metagenome	421	Y
F005464	Metagenome / Metatranscriptome	400	Y
F025386	Metagenome / Metatranscriptome	202	Y
F101872	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_1002553510	F025386	AGGA	METSFETETKNTTANTWAGFCLIVFFISTIVAVWGEPDLIDALIYHLSDGYYK
Ga0310121_100255353	F101872	AGGA	MDTLKQIIQDIKVSNSLQGQANIGSRCNNFRLSEEDIRILMFASKPIKEPCDCHDELRFDQNVFKKPSIHETLG
Ga0310121_100255357	F004843	GGA	VLAIAALSLNGCAKDATAEDSPTTTPTETQNEVRTSSVSGETIWIAIVMEWNPVSYTIDKEFSSEVNCWNYYDNGAGESKMLNSYGTQVLDHQGNKPGKEYHKKHRPAHREYPTRMYKNHGDWMVWLTCDIKGRNKGL
Ga0310121_100255358	F005464	AGGA	MNFRNKDNALRMAGWTLSLLCMIIGSYFVWPHIHVALLGIGFFYLGIRIFNFSTFEEYKEDRVKLLLKLNKW