Scaffold Ga0310121_10025454

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10025454
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4230
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015147	Metagenome / Metatranscriptome	257	Y
F034712	Metagenome	174	Y
F069450	Metagenome	124	Y
F084710	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100254542	F069450	AGGA	MKDQISGVPSWERVRELKRLEAQYPKADWSEGSYHDQMLKLADRKRKRYGTTCSYNGY
Ga0310121_100254544	F015147	N/A	MTNKTNKLKWLINDLGLNELNAWLWITGGAALTAAVLVLLTGGGEEVFRFWRVFFLKLM
Ga0310121_100254546	F084710	N/A	VSERKNNMKNEMKNEIVHPIDNGQVITNEVIVSCCGCNEELRITREAADEWTDTDWFMCHECE
Ga0310121_100254548	F034712	N/A	MRDMTRETAEAIDQTRMDMASVEGILTWVGHLADRNKDGDMDSIKQLVKEQRAALTALRKGLNKARFDNAYSPLGFELESSDADPWASKNLQE