Scaffold Ga0310121_10024816

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10024816
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4298
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002667	Metagenome	539	Y
F017252	Metagenome	242	Y
F042643	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_1002481610	F002667	N/A	VEIEVLSASLILVASLCGGMCAVFIARSKSTVNKHSRQRIKDFENDIQYLADSKKIEAKEYRQEILRLKSSVNRIKDGNVVTDTDLKNSGLGEVIMQLIPGKYRKAASFLVPQVEEAVKKDPAIVERIYEKIKSANTSNKQAEPGNQSEGIQTL
Ga0310121_100248165	F017252	N/A	MPQVIQGYLVNVKPSDTTAESTMVADIIAAGAAATTIHYPAQYSSYAISAAIKNQDGTNACTFSVNGQPAISLSAGADQNINNQSIVSIQVTPGAAGTTDILAQVTPMYLSTEQARFSRDSG
Ga0310121_100248167	F042643	N/A	MAFKLKTGKTINKVLAGAGIVALLGVVGNMVAPGFMGSTMGKAVEGIAAYSVGGLESVIGAVGAMFVGGRTASTSLDNTLTESL