Scaffold Ga0310121_10024613

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10024613
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4319
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003270	Metagenome	496	Y
F008691	Metagenome / Metatranscriptome	329	Y
F024325	Metagenome / Metatranscriptome	206	Y
F040141	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100246131	F024325	GGAG	MSGSWDIATATSLGTGVAKTQINGGANITKPTQAVNLVEVVPYTVSSGVYTAGESIALTAYLDSFSVDLLPKRIIVPPVQAGLGAFINIVVPLLE
Ga0310121_100246132	F003270	N/A	MAKKRGRKRKAKKSGSKSIKSMLRQVVSKGAAPLAFWQQLSEKDYQVLNADGNYASLDYLGKLKVAANILTGSLTGRVAFADQYNPSPSGQPRINPAGVINKWTGIGVAAKLYGKIGKSMKLPEAAMIDRVGSKVIFGGAVGGFFDPPGNPGGYVSTANVTPNVMVQNRSQTNRAFATTQRNRSIVPLDSFDYSTGSAFR
Ga0310121_100246133	F008691	N/A	MPLGYDVKEEATEVKKNLFAKRDSFVLLVVAGVVGGIITRAFVPKSITEGSVLGRFKSWFGFDQEEYEEEE
Ga0310121_100246139	F040141	N/A	MRCKSHIFIFKTDKCMKGAYSFMRKTSICYFCMRQLKRMYGLTESDLIKDKFYKKFISTDKDFSQTTRNF