NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10023414

Scaffold Ga0310121_10023414


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10023414 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4447
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000730Metagenome / Metatranscriptome917Y
F001992Metagenome607Y
F032306Metagenome180Y
F033074Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0310121_100234142F032306GAGGMGAGVMSYSQNLGHVSQLGEIRKLPKLKLHSTLNTWVTCPVCRGGGTNTLPHQNGQVDLIMCPHCKGKKKYFNGALIG
Ga0310121_100234145F001992GAGMVAPAIALMGAKAGLKASKQYSVSVLGYDFIGLSMRLFLFLGVGVLVQAYFTATIAGGNWLNTVAGFFNIKFPSTLPEWLTKLFTTGYSGVAFWQIMQIVSILLVLIEYQQYDRSLKEKGETANVTTQGVFLMIGLALSLMVFPQMIQKFKEKQILSTSVTKGFSGEIL
Ga0310121_100234146F000730GAGGMAEFIAPEIIPFIWFGGIAITIYVFFHKFSDVIKEKFRQTNLTRRKEERGGNTDGQIDDLIGNAPRMLNEVNKIITEQTAAGVPPEQMKGILQKKQMLELVTNNQEVINILGKPLLKKVLGFVRAI
Ga0310121_100234147F033074AGGTGGMPHQEPSGAGLRVPSQIKFLPTANVLDYGEDLALHLTSVGFTEQAITFSAAAITRSLDNGGQPLDALPHVYSDTDDGLLLHEGAGNAFDVDYVFNPDMVATILKISVNVCMGLNVSAYTSGNFNLGDLTVTVTEQGASNRNIYTNTFASDAVNLAATGTSLHWFTVDIVEPFQVFPNQPIKINLSLNSTLATGTSQAGIVSVAPYVNTAVMKSFNESAVILHVHAGLGHADDIFRFNMNRVKSEAFNG
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