Scaffold Ga0310121_10019620

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10019620
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4957
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F001048	Metagenome / Metatranscriptome	793	Y
F017721	Metagenome / Metatranscriptome	239	Y
F018265	Metagenome / Metatranscriptome	236	Y
F028833	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100196201	F028833	AGAAGG	MFNVDKIAEKVANEPMEDIQEEVVPQHVIDENRADMIRERRKELAQMEMYDDPYLNWSGH
Ga0310121_1001962010	F001048	N/A	MKIKSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIELLVNKRVRWEIGSEGMTIWNACGVKDIPTLAKAYGIK
Ga0310121_1001962011	F000615	GAG	MCRLRTFYECSDGRMGFAEIVLSYDEDIAGMIRHWSTGGRMVISEHIDLV
Ga0310121_1001962012	F017721	AGG	MSFREIWNGPSFLNRSDVARRMAERDNAGKRAKKHKKHIVHEHFRKEWDADLWD
Ga0310121_100196206	F018265	GAG	MSMEIHTLRAVKITQNIFELRKVNREIEEVSKIMELLERRKTRLENVM