Scaffold Ga0310121

Basic Information
Taxon OID	3300031801 Open in IMG/M
Scaffold ID	Ga0310121_10019606 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031801 Open in IMG/M

Scaffold ID

Ga0310121_10019606 Open in IMG/M

Source Dataset Name

Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4959
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4959

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	73.0038	Long. (^o)	-140.0007	Alt. (m)	Depth (m)	486
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Western Arctic Ocean

Coordinates

Lat. (^o)

73.0038

Long. (^o)

-140.0007

Alt. (m)

Depth (m)

486

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F003270	Metagenome	496	Y
F008691	Metagenome / Metatranscriptome	329	Y
F021554	Metagenome / Metatranscriptome	218	N
F026289	Metagenome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100196063	F002150	AGG	LVAIQSAMVAGKLAKTGSKVSGEFLEKKLGYNFVDLVTKITLFYIIAFMIAKYMEAIIYFQGGLSTIAGFFGIKMAQADQLPKQWVELFVDTNQQTYTSTPTGAGSFNPPGWDRPYDYGTPEHQEAEPYLFPEKEIKFKFWDLVNAIVIFYIGWEAYKYYRNGGRDFLTMAIFSLMGLMIGVLSFSKFLGKFSLNRFQEENK
Ga0310121_100196064	F021554	AGG	MIIEEIPFFTEFVLLGIILGFGYGFTKLFLNHAKDKNRVNRKEKKVETDNKLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQRLESELNQARTLQKYEPIIRIAGKPLLKKAMSLLDNFKV
Ga0310121_100196065	F002100	AGG	MSFRSQPGFKPALIKPTYDVANFGHDSVLPLNCLSGSTTTLTPSTATFVQVLEDSRVPIDEVDMFITDSDKMEMIHAGNDTDADFSWEWTPDMSAQAYQISLNFAVGMKVSAHTSGNFKISDVQIIIKQVGGGEGDFVYLNKIVDPGMTNMAGVAEQVAIINFSTRVSAKVFDKPITFQIKVNTDNATGTYQTGIVPLFCYFGAAVPKTWTTSSVLLHIHADLAHAFPIFRDQDNMNLLDTGIGL
Ga0310121_100196067	F003270	N/A	MVKSKKMTKKQKAAAAARKSKGSVKNMVRRAADTLAAPVAFWSQLTQKDYEVLNASPQYHALDYLGKLKVAANILTGSLTGKVAFSDQYNPSPDGNPRINPAGVINKWTGIGIAAKIYGKVGKAMKLPEQAAIGRIGSKLIFGGAVGGFFDPPSAQGRVSTYAVTPNVMVQNRATTSRSYGVSRRNRGFVPLDSFDYSTGSAFR
Ga0310121_100196068	F008691	N/A	MSSIAGYNVKEEATEIKQNLWGSRDSIITLVVAGVVGGIVTRFIVPKEITEGSIFNRFRSWFGYGQEEEEEEE
Ga0310121_100196069	F026289	GGTGG	MNLMEEKKPKSKNEDEAFIDTLVEMLAEPHQDLAWNERFKAVVRKHFDI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310121_10019606

Overview

Ecosystem & Geography

Associated Families

Sequences