NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10018610

Scaffold Ga0310121_10018610


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10018610 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5122
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera gargensis → Candidatus Nitrososphaera gargensis Ga9.2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033842Metagenome / Metatranscriptome176N
F040140Metagenome162N
F068933Metagenome124N
F078831Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0310121_100186104F078831AGCAGMVQTNESIYGKHRAFTSSQQNLVLPGAKSKYLEAVSITINGLQNGGSVPSIANALGLVNPLEIDVGGIPQIRVRLSDMYAIDMLWLQHNPLTKISAGDDQEWIVNQIVYPCWFPPSRAEATLSATYAAVTAADNTEISITSEYLDGIPRNEALYYSEFSKNTDGVDSSSFGNWTQTTNLVGNMTGMLFNSPTIPGGSTLMEDGTIQQVRIQGNGNTLLVYEWAEIQNPGIFNGQMFNSLEESPANTSILDNYRWLSLAKEPIPAGTRVQTDVMAGVDSSTIRTVQMQQVPFRGR
Ga0310121_100186105F033842AGGAMSQEAKKIMKLETLLKPSKLIDKAKLGMKGAAGFAAATVALEAGTQLLERFVFDRYLPQAANLMNTVITNSAPGLGTIDVRDAIVLLPAEQQTYKALSSGNKQAHLINALASYGTKVILRRTGLNPKEIADKTEQIIAQPTRLPAVM
Ga0310121_100186108F068933AGGMSKLDLLKQLHFELLRPKPMPGMKGTIGGPSDLIPVHAAGKLKGYWKNVKHKPATGFEVSKKNKFKE
Ga0310121_100186109F040140GGAGGMLQCQALKFPEFGPKHEDTGYDGSSHWKVLHDEVKSIECDFCQQKGIKLMRGLHDSVNTHLGKEVQHPKDMDFLLKHVAWSAEQQGSGLRCFKCPN
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