NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0310121_10017205

Scaffold Ga0310121_10017205


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10017205 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5367
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004843Metagenome421Y
F005464Metagenome / Metatranscriptome400Y
F006146Metagenome / Metatranscriptome380Y
F020372Metagenome / Metatranscriptome224Y
F022429Metagenome / Metatranscriptome214Y
F042386Metagenome / Metatranscriptome158N

Sequences

Protein IDFamilyRBSSequence
Ga0310121_1001720510F006146N/AMIIATTTLIIVQIVVVGCVLWLNPEPCPRKYRVTQEQGGVLANMTDIHRYCELDYGGKFILKDKYKED
Ga0310121_1001720514F004843N/AMKWILIIAIALSLNGCADTADAEDSTATTPAEEEQNRTADASGTAWVAIVMTWNPVVYTIDKEFSSEVNCWNYYDNGAGESKMLNSYGTQILDHQGNKPDAEYMKKHRPAHRVYPTRMYRNFGGWMMWLTCDIKGRNEGL
Ga0310121_1001720515F042386N/AMNNAGLPCNYQEGETGQFELFHGSTSYLKEGDGVPKFFTLEHVERKLGGLGEY
Ga0310121_1001720516F020372GGAMKQEEEKNLATVRIYIDGKEMLYSHQNMVAAINSFLPYLTNDDLTELMKTFHTLKDHRRQKEYLAKLETLKHSWPYPDTIQQPEND
Ga0310121_100172055F022429AGGMSSITSFSELWNGPSFLERKPSALRMAARDGLARKKRDKSGKLKAREHFAKDWDKDLWD
Ga0310121_100172056F005464GGAVGLKDENVIRVGGWLLSLLCVLIGLYFVWPHIHVALLGIVFLYLGVRIFNFSTWKEYATDRKQLLHKLQGW
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.