Scaffold Ga0310121_10017169

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10017169
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5373
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008691	Metagenome / Metatranscriptome	329	Y
F022428	Metagenome	214	Y
F031531	Metagenome	182	Y
F040141	Metagenome	162	Y
F089026	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100171691	F089026	GGAG	MTKYKTIKNHFITEFIEKYSDPSNRHFIQVMKKWR
Ga0310121_1001716912	F008691	GAG	MSSIAGYNVKEEATEIKENLWGSRGNIITLVVAGVVGGIVTRFIVPKEITEGSIFNRFKSWFGYDQEDYEEEEE
Ga0310121_100171694	F031531	N/A	MSYDPYTNSYYDLKDGQLLAKMETEIKSVFEDLFVIELEKEKTLVIKQITNESWSDQTKKSGVFYIEQKNRDKKGISLTKSDCGKLAIILKEISEK
Ga0310121_100171696	F040141	N/A	MRCLSHFFIFKTEKCMKGSYKFMKKTRICYFCVRKLKQLYGITESDLLENNLYKKFISSDKDILKTIHNFLPYTRLPLY
Ga0310121_100171697	F022428	AGG	MFLALLRGLVIPRVKTLPNKVENTFFVMNLMWKVANSKEFGFQPLRQFTTKLRLFSD