NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10015865

Scaffold Ga0310121_10015865


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10015865 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5647
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000730Metagenome / Metatranscriptome917Y
F001992Metagenome607Y
F032306Metagenome180Y
F033074Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0310121_100158653F033074AGGTGGMPHLEPSGAGLRVPSQIKFLPTANVLDYGHDVALHLTTVGMTEQAVTFSSAAITRSLDEGGQPLDAFPHVYASTDDGLLLHEGNDTQFSTDYIFNSDMVATVLKFSVNVCMGLNVSAHTSGNFNVGNLILTVTEQGASDRVIYTNTFASGAANLAGTGTSLHWFTVDVVQPFQVFPNQPIKINLTLDTTLATGTSQAGIMSIAPYLNTAQLKSFNESVISFHIHAGLGHADDIFRFNMDRVKSEAFNA
Ga0310121_100158654F000730GAGGMPEFIPPEIIPIIWFAGIVITIYVFFHKFSDVIKEKFHQTNLTRRKEEKGGNTDGQIDDLIGNAPRMLNEVNKIIAEQKAAGVPDEQMKGLFQKKTMLEAVTNNLEVINIVGKPVIKVLLNFVKKMI
Ga0310121_100158655F001992GGAGMGARVGLKASKQYSVSVLGYDFIGLAMRLFLFLAVGVLIQSYMTATIKGGSFLNSIAGFFNIKFPDTLPEPITKLFTTGYNGIAFWQILQVTAILLVVFEYTQYDRSLKEKGEKPNATTQGLFLLITLGLALMVFPQTIQKIKEMKIING
Ga0310121_100158658F032306AGGCGGMSFSQNLGHVSQLGEIRKLPKLKLASTLNTWVTCPVCRGGGQTVTPHQNGQVDLMMCPHCKGKKKYFNNDTR
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