Scaffold Ga0310121

Basic Information
Taxon OID	3300031801 Open in IMG/M
Scaffold ID	Ga0310121_10014942 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031801 Open in IMG/M

Scaffold ID

Ga0310121_10014942 Open in IMG/M

Source Dataset Name

Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5863
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (92.86%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5863

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (92.86%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	73.0038	Long. (^o)	-140.0007	Alt. (m)	Depth (m)	486
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Western Arctic Ocean

Coordinates

Lat. (^o)

73.0038

Long. (^o)

-140.0007

Alt. (m)

Depth (m)

486

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043987	Metagenome / Metatranscriptome	155	Y
F054107	Metagenome / Metatranscriptome	140	N
F066859	Metagenome / Metatranscriptome	126	N
F068933	Metagenome	124	N
F078831	Metagenome	116	N
F081448	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_1001494210	F054107	AGGAG	MKMKKELSKIQIEHKEQIRKAVQEKEPKVNAAAGNFVTAVQTGLTEMNKRLQDMEQKVQEKDKLINDMIVAIKSQHDVLENPPPPEVQGSEAERNQPMTKGDFFQIIKDGIQLLRQQTQGVDPRIERAIDMQDKLVDAMWEKMARALISDKDTSPGVN
Ga0310121_1001494212	F043987	GGAG	MNKNYLKVPAEYLWIINKKTKGLLLSELKRRAEVLE
Ga0310121_100149422	F066859	AGG	LVHELPDNKGRVQTRINTSRAGYYVSNFDVAESVTLTPQGGGTIDIVLPPGAKVSIPDKIGMVAQGSNSSRNYVFLMWTAGYAN
Ga0310121_100149423	F078831	GAG	MVQTNESIYGKHRAFTSSQQNLVLPGAKSKYLEAVSITINGLQNGGSVPTIANSLGLVNPLEIDVGGIPQIRVRLSDMYAIDMLWLQHNPLTKISAGDDQEWIVNQIVYPCWFPPSRAEATLSATYAAVTNADATEISITSEYLDGIPRNEALYYSEFSRNTDGVDSSSFGNWTQTTNLVGNMTGMLFNSTTIPGGSTLMEDGTIQQVRIQGNGNTLLVYEWSEIQNPGIFNGQMFNSLEESPANTSILDNYRWLSLAKEPIPAGTRVQTDIMAGVNAEAIRTVQMQQVPFRGR
Ga0310121_100149425	F068933	GAG	MGKLDLLKQLHRELLMPKALPGMKGTIGRPSDIIPVHAAGQLKGYWKNVKHKPATGFQVSKKNKFKD
Ga0310121_100149428	F081448	GAG	MKALDVLSAIVKHKDLAKEYALQESKDLRILSPKKDTALACLLSGIESVETIPTWVKTSWFNWIFYAMRMISDKEVDALAESMSKGLEEYKMAYFSQEFIESLPEEKRPAAEALLHPHLLKLKGSRTTMEETLKEWRI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310121_10014942

Overview

Ecosystem & Geography

Associated Families

Sequences