Scaffold Ga0310121_10014667

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10014667
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5924
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005749	Metagenome	391	Y
F007138	Metagenome	357	Y
F041256	Metagenome / Metatranscriptome	160	Y
F101492	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_1001466714	F041256	GAG	MNLNEYLIENDRYIGDVVILNSVATALDKVSGDTFPMMVDNTIGVDEPMNIMEMEINGDSYEWFEALSDNDKSAVDEVMVNLSYESWVEGHIGEPEYLGER
Ga0310121_1001466716	F101492	AGGAG	MFKTAAEFGKEFRSEIAPMLKSKGFDLKIASSRRSYYHDGKLGVKITKVPTNFPVWTSEYSRWDRTKNADRLLATIEDRIQILISNNNVELKTKGDDIVDIRVDVEFGSSVKYIKYETPTEK
Ga0310121_1001466717	F005749	GGAG	MKKSWLLTMSFDEHDGSPNDIKTLYHGKTKHGMVKTMNLFQDMNEHLVLALVEIDEKSTYDKIIDKEDTEEMFFMDSKSNWNNGKTYEDLKEEALEEMLMGSLIKGDMGYA
Ga0310121_100146679	F007138	AGGA	MTDIQQDPGIYPSDWKPPSTILDIQKIFEAHSFFDGRMIGGSKTGYSSQHADELIVFNANVLMPGYGKVWYGDLNLTEDYLVLKDIAKSMNSTLYVLWESDGRFGEENKPFDELIKKSVWNTDELKPTLEWYKKSKNKA