Scaffold Ga0310121_10013249

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10013249
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6307
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F003270	Metagenome	496	Y
F012984	Metagenome / Metatranscriptome	275	Y
F015739	Metagenome / Metatranscriptome	252	Y
F018017	Metagenome / Metatranscriptome	237	Y
F021554	Metagenome / Metatranscriptome	218	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_1001324910	F021554	AGG	MIIEEIPFFTEFVILGLLLGFGYGFTKLFLNHAKDKNRVTRKEKKVETDNKLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQRLESELNQARTLQKYEPIIRIAGKPLLKKAMSLLDNFKV
Ga0310121_1001324911	F002100	GAGG	MSFRSEPGFKPALIKPTYDVANFGHDSVLPLNCLSGTNTTTLTPSTATFVQVLEDGRVPIDEVDMFITDSDKMELIHAGNDTDADFSWEWTPDMSAQAYQISLNFAVAMKCSSYTGGNFKISDVQVIIKQVGGGEGDFVYLNKIIDPGMTNMAGVAEQVAIINFSTRVSAKVFDKPLTFQIKVNTDSGVGTYQTGIVPLFCYFGSAVPKTWTTSSVLLHIHADLAHAFPIFRDQDNMNLLDTGIGL
Ga0310121_1001324913	F003270	N/A	MARKTRRRRKAKNGKRKSVKSLARTWANRLASPVAFWSQLSQKDYEVLNASPQYHALDYLGKLKVASNILTGSLTGRVLFGDQYNPSPDGNPRINPAGVINKWTGIGIAGKIYSLVGKQMGLPEQATIGRIGTKLIYGGAVGGFFDPPSAQGRVSTYAVTPNVMVQNRATTSRSYGVARRNRSYVPLDSFDYSTGSAFR
Ga0310121_100132492	F015739	GAGG	MIRPEKHTFKFSPKTKSKEDLQLIKDLEQLVKELDLTKTQLTRKALDDFVKRTWQLKN
Ga0310121_100132493	F012984	N/A	VAVSIQEPLNEIQKKQYLTELGLEPILGYYNNEIRKHDHICFKKRELFEKRDRCFKLMREECRELC
Ga0310121_100132494	F018017	N/A	LKNDSLNADNTTTKIDSLWANQQKIVQIPPLSSLKLHGDNCGGFRACHTCRGTRFVYIRSKWDNRITYKKCMACSGSGSIDTRTIK
Ga0310121_100132499	F002150	AGG	MVAIPATILAKEIGKRGTKASGEFLEKKLGYNFVDLVTKLALFYIIAFMIAKYMEAIIYFQGGLSTVAGFFGIKMAQADQLPKQWVELFVDTNQQTYTSTPTGAGKFNPPGWDKPYDYGTPEHQEAEPYLFPEKEVKFKFWDLVNAIVIFYIGWEAYKYYRNGGRDFLTMAIFSLMGLMVGVLSFSKFLGKFSLNRFQEENK