Scaffold Ga0310121_10011658

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10011658
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6826
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006146	Metagenome / Metatranscriptome	380	Y
F014792	Metagenome	260	Y
F050431	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_1001165818	F006146	N/A	MIITTTTIIIVQALVVSWIVFTKPDPCPRKYRVTQENGGILTNPANIYQYCELDYGGKWVLKKEQ
Ga0310121_100116582	F014792	N/A	MNNERENYSWGIIQDMIEKEISAAFKLREPPIIPTKKAIINTIKQTVKQHRNEMDVHHYNGGNIKS
Ga0310121_100116588	F050431	N/A	MKYLRYFFGVWMLYGIGYLGGDIIVASLWAGAAFGFIDIMKGMST