Scaffold Ga0310121_10010391

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10010391
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7323
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F001606	Metagenome	664	N
F001922	Metagenome	617	Y
F004658	Metagenome	429	Y
F047719	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100103911	F000704	N/A	MPHTNGEILPSNVKAVATYDIGSYGEDLFLPLTDVGLTETALTFSTAAVTRDTSNSNQPIDTYPRVFSDTDSGLLLNEGNDTAYNQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLNIGGLHLKITERSTNNRLLYENTFQSGAATLAATGTSMHWFTQDIVETIKVNKGNPIDIQLNLVTVVTGTNTRQEGYAPVAPLLKTAVMKRFYESGMSLHLHPDLSHADGVFKYSKQRVSNLGQ
Ga0310121_1001039111	F047719	GGA	MSIITEETDILKTAIRVVKSERFQRFCLKCGKILPTKIKQNYAHNCEKPDFLL
Ga0310121_1001039114	F001606	GAGG	MTYGYDDVTFTSIGTGVAETQLNSGTSLSAPDPAHAFNAVIPYQMELGAFTTNQSLLTAFRIQSDDVAVEPKKFVLPNINTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYAQALVANTVAPGVGATVLYDTESTNGVEQYYTRPTNENASSTTINTRTQGGDMTIQGGNEITGLYTVVSGATATASEHTVGYSEFISPDFETSMPYRIAVQPTATGLGAAANAITGG
Ga0310121_100103913	F001922	AGGA	MIQKLLVEEGMKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINSYFQATIQGGIWLNSLAGFFGLNFPTTLPEWTTKLFTSGFHNITFWQIVQVISVLIVVMEYMQYDRMLKEKQEKPNITTGAVFAMIGLGLSLITFPQIVQKIQEMRVING
Ga0310121_100103919	F004658	N/A	MPEYLKKVYDFFKTSNTAKDVLIGAVSFIAGGYILNKIVKRDEDQDEE