Scaffold Ga0310121_10009990

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10009990
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7510
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F001606	Metagenome	664	N
F001712	Metagenome / Metatranscriptome	648	Y
F003616	Metagenome	477	Y
F022118	Metagenome	216	Y
F047719	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100099901	F001712	N/A	LARRGRKATTKTVTRRRRRLPSRKKVGKSIGSQWGKISKGAGVLAFLSNVTGSDMSASAGQPIGARAQNFGNSLLGRISGYTPFKNAAGANTPQTIGIDGIFNKWSGIGLASTVYGMLPVKMLPHKGKAKTLGKSLLTAGILSGIFMPTNNHSNLISPSRAITVSSSEVSYT
Ga0310121_1000999014	F047719	GGA	MSEIEDPSLLKTGIRVIHQRYCLKCGKILPTEINENFIHNCEKPDFLL
Ga0310121_1000999015	F022118	N/A	MITIPDFKCSKQSSHGREERIEFIISEVKKHPDFHFEGAAYTKEKCSDLASVDDLINLCLRMMHYAPQTRKDITEQILMELHII
Ga0310121_100099902	F001606	GAGG	MTYGFDDVTFTSIGTGVAETQLNSGTSLSAPDPAHAFNAVIPYQMELGAFSTNQSLLTSMRLQSDDVAIEPKKFVLPNISTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYGQALVANTVAPGVGATVIYDTESTNGVEQYYTRPTNENASSTTINTRTQGGDMTIQGGKEITGLYTVVSGATATASEHDVGYAEFISPDFETSMPYRIAVQPCATGLGAAANAVTGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARAGGASNFINFVRYSKN
Ga0310121_100099903	F000704	AGGTGG	MPHLNGEILPSNVKAVATYDIGSYGEDLWLPLTDVGLTETALTFSTATVTRDTSDSNQPVDTYPRVFSDTDAGLLLNEGSDTVFNQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLNIGGLHIKITERSTNNRLLYENTFQSGAATLAATGTSMHWFTQDIVETIKVNKGNPVDIQLDLVTVVTGSNTRQEGYAPLAPVLKTAVLKQFFESGISLHLHPDLSHADGVFKYSKQRVSSLGQ
Ga0310121_100099908	F003616	AGG	MIWSEKLGHEIGTYNSLGGMRINAKPFIHSTSNTIVTCRICKGTGLNAITHASGLVTLNPCVLCKGVKRRSNRI