Scaffold Ga0310121_10005054

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10005054
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11433
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (51.85%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F008596	Metagenome	331	N
F008691	Metagenome / Metatranscriptome	329	Y
F018017	Metagenome / Metatranscriptome	237	Y
F021554	Metagenome / Metatranscriptome	218	N
F022428	Metagenome	214	Y
F040141	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_1000505410	F018017	GAG	LLNDSPNADNTTSKIASLWANQQKIVQMPSLQAMHIHGNDCSGFRVCHTCRGERLVAVRSKWDNRITYKKCMACHGNGSIYVQTR
Ga0310121_1000505414	F002150	AGG	LVSLTAPAMAGIKAKKVSGEFLQQTFGYDFLNLVTKLAMFYVIAFLISKYMEAVIYFKGGLETVAGFFGIKFVQADKLPKQWIALFIDTEKTTYTQQEYEHGSQETAGKFNPPGWDKPYDYGTVAHQEAEPHLFPEKEMKYKFWDLINAIVIFYIGWEAYKYYKKGGRDFLTLAIFSLLGLIVGVLSFSKFLGVMSMNKFQEENK
Ga0310121_1000505415	F021554	AGG	MILEEIPFFVEFVITGIILGFGYGFTKLFLNHAKDKSKIRKSERKAQQSHSIEDEMDKYLDNSASIVAHLESEITNLKSQGATPEQTKRMEGELNLAKKVQQYEPIIRIVGKPAIKKIMSIIDRV
Ga0310121_1000505416	F002100	GGAG	MSFKPALIKPTYDVANFGHDNSLPLNCISGNVATITPSTSTFVQVLEDSRVPIDEVDLFITDSDSMAMIHLGNDTDFDKTWEWTPDMSAQAYQISFNFAVGMKVSSYTSGNFKIDSVQVISNQIGGGEGTVNFVNKILDPGMSNMTSAVAQVAIINFSTTVSAKVFDKPLTFQIKVNTSSGSGTYQTGIIPLFCYFGTAIPKTWTTSSVLMHIHADLAHAFPIFRDEDNMNMIDTGIGL
Ga0310121_1000505417	F008596	GGAG	MSGSWDIAEPSSIGTGVAKTTINDGNNVTKPTQAVNLVEVVPFDASSGAYTPAESIAVTMEIDSFSVDLLPKRIIVPPIQSGLGTIANTVIPLLEAYECNTGLQEGATSQFIISGQHQVGTTVATTLGCGLHYSTTPPNRPEHFYHKPDDESTFSTATTTTGNSFTINDGMWVEDLYVSVWQAVYTVSQSLIGYGSFSSNDFGNSLPLKVPMQPGGAGLGNAGTTGILQLASYHNIHMPMKTSCKINTAFTNDVTTTGTNSFILGVGYTKQ
Ga0310121_1000505419	F008691	N/A	MPYNVKEEAQEVKKNLVGNRDTFILLVIAGVVGGVITRFVIPKSVTEGSIFDRFKSWFGKDYEED
Ga0310121_1000505424	F022428	N/A	MFLALLRGLIIPRLKTIPEKAENTFFVMSLMWKVANSKEFGSQPLRRFTTTLRLFSD
Ga0310121_1000505425	F040141	N/A	MRCKSHFLLFKTDKCMKGAFKFMKTTAICYFCARKLKKIYGFTENDLLKDNFYKNFISTDKGFLQTIDKKLINNLNSL