Scaffold Ga0310121_10005040

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10005040
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11447
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040142	Metagenome / Metatranscriptome	162	Y
F065855	Metagenome / Metatranscriptome	127	N
F074980	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_1000504015	F065855	N/A	WDTFVSSTDRSTGDPTVDIGIASLNIEGSGVGGKLNRVGMHQLTYAKFTGNTFLRGVASNGPRDYSYEPGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQSETGRLITGAITPIAW
Ga0310121_100050402	F074980	GAG	VDSTPTEKQLVYLRKLGYHGPKPETLKEASKLIEERAPPKANSSYTPKPTPVTESSIVHEEATEEDLRYAEALLNAAEKFHRLAVTSIKKRGEPLRGDIINAERNFLVKVEKLRSCNNS
Ga0310121_100050409	F040142	N/A	MADYGDLAEAVNAKKMQVFVGADNSDGTAVTNQWKLVQNARVLMSHPIFREPTTSGGVATYTGAPDNTISGTLLFTRDEWNYSPEGFQLLLAPSAGGEVPVKNWTIKFIDVGGSNLNTLTFASCKLSVVDISKSVEGAVKADITVICPGEPFTA