Scaffold Ga0310121

Basic Information
Taxon OID	3300031801 Open in IMG/M
Scaffold ID	Ga0310121_10004547 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031801 Open in IMG/M

Scaffold ID

Ga0310121_10004547 Open in IMG/M

Source Dataset Name

Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12197
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (63.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12197

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (63.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	73.0038	Long. (^o)	-140.0007	Alt. (m)	Depth (m)	486
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Western Arctic Ocean

Coordinates

Lat. (^o)

73.0038

Long. (^o)

-140.0007

Alt. (m)

Depth (m)

486

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004843	Metagenome	421	Y
F005464	Metagenome / Metatranscriptome	400	Y
F008155	Metagenome / Metatranscriptome	338	Y
F013649	Metagenome	269	Y
F015350	Metagenome	255	Y
F070554	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_1000454710	F005464	GGAG	MKDMHFRIAGWVLSLLCILAGSYFLWPRIHVALLGIVFFYAGIRVFNFSTFKEYEEDRRKLLFKLTK
Ga0310121_1000454713	F013649	AGGA	MAALPKETILERLPSSIRMREHDEVRKIAKKLKRPKKEHFAKDWDTDLWD
Ga0310121_100045473	F015350	AGG	MKIYKWLIILVMAILVGWQYDAFQKNLHEVESRIKKFESVDLFNILEQISLAHIESVDTVDILNKKQMELQALEEEIKEKFAIQERELRTQVKTIETKLQKLRSELYDGLTEIERDVSTIDSVVDEKFKTLWMMINNK
Ga0310121_100045474	F004843	N/A	MMKWMFIIAIALSLNGCADTADAESSAAITPVENQEETTTTTSNETIWVAIVMTWNPVVYTIDKEFSSEVDCWNYYDTGVGESKMLNSYGTQVLDHQGNKPDKEYMKKHRPSHREYPTRMYKNFGGWMMWLTCDIKGRYEDL
Ga0310121_100045478	F008155	GGA	MKEKDMTHHEHQHLATLVYDIGLKKQIEERVEAKYSKRIEYLVNANNELMYELEQCELECYGRGYEGTTNAR
Ga0310121_100045479	F070554	AGG	MPRKRQHKPRQGLDTEVVREIERQTQKQQEIDSRRTKQKLIFWSLIIFGSAIAIGVGIVLSDLAEW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310121_10004547

Overview

Ecosystem & Geography

Associated Families

Sequences