Scaffold Ga0310121_10004404

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10004404
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12427
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003161	Metagenome	504	N
F006641	Metagenome / Metatranscriptome	368	Y
F022755	Metagenome	213	N
F056905	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100044041	F056905	N/A	DKEAVQLEYNLQRARYERLLLRWWSQAIGPTDDQSARATGIVLDILRRLDTIGGLIPDKPLIQLQQQNIMVGGVTFADLLREAMDGAGQIVEAEHVDTECDLAVEEAEGEDIREL
Ga0310121_1000440411	F003161	GGAGG	LSRSGALDRIDVLLSTITDPAFTAVIRAEPLALSGTPVLAYWVQSRTGGWQTLSDIGSTTRIMIRSYFRLQASADVRESIELELWDAMVEVDTKLRSDANLAGNCTDSTVGPATVATLDMGGGLYRTATTPFDIQLMEEITISP
Ga0310121_1000440416	F022755	N/A	VIATNGTKPKKGFRIPDQTAHITFSGTDYDGAEVWVRLNVSFAHYIALREAAEGDDQVKMAELFGGEVLMEWNLEGAGGESIPATGAGMLQIPLSLAMLIVEHWIEAVAAVPAPLAETSGDLSTLAAASTVTVEG
Ga0310121_100044048	F006641	AGGAG	MPLAMCIQNFSFGATGETFEAGVEYDVAAATLKANPNYFEKQAGTAENKMADTTEDKAE