Scaffold Ga0310121_10003478

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10003478
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14350
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001594	Metagenome / Metatranscriptome	666	Y
F005148	Metagenome / Metatranscriptome	410	Y
F007647	Metagenome / Metatranscriptome	347	Y
F015879	Metagenome	251	Y
F097502	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_1000347810	F005148	GGA	LKQKKYEEYLKRTLPESEEVECKNCTRKFFDEWNLLSLASLDMCMLCANRNIDKQTIERKYQNVK
Ga0310121_1000347813	F001594	GGAG	MEKTKLTKDEYLDSLDPDNLNLSKKDLLNFCHSCIEEWKENRIGNFKFIVSMELIVAGVKITPEDVLKAVWKKILIWFWDLQFKNALAEKEGMLRKLRELGSG
Ga0310121_1000347814	F007647	N/A	VDAFFNSLKTEEDKMLETGLSHNVTVELLHQATLQLVKENPKRFEQYVKFFEEGCMYLQDESDEVPEVEK
Ga0310121_100034786	F097502	GGA	MNPETMNHPELLNYGKPDPVVTENKTTLVLHCVGCGKFKDKKSKSTKCTVCLFGMSHEEAVKHGFIQA
Ga0310121_100034788	F015879	AGGA	MKKDDVIIMTCDVCGAMSHAIKAQVPQGYYVKDEFVICKICFGELK