Scaffold Ga0310121_10002186

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10002186
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19007
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005103	Metagenome / Metatranscriptome	412	Y
F005400	Metagenome / Metatranscriptome	402	Y
F049706	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_1000218612	F005103	N/A	MEKEVEIQIFINKKEMLYSHQNMARAINTFLPYLTNDDLTELGQDILDLMDHREKKEAESVIEVAKHSWPYPDTKT
Ga0310121_1000218627	F049706	AGGA	MKFEKDHPYMKRLDEVLKQFLVVKVEDIEEVERGEDSEDYEEMKQVILDALFMRYAGETIRK
Ga0310121_100021864	F005400	N/A	MPQLSKPQLGKNHLGFKDLTYTNMCYRCDYCDQGYNQIYWLQQIAMEYFICDNCKEYYRLTVHDLFELQYVETRKEWQDADCWPNNGFFPYPIGFDEENA