Scaffold Ga0310121_10001507

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10001507
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23665
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (67.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002715	Metagenome / Metatranscriptome	535	Y
F006919	Metagenome	362	Y
F015261	Metagenome / Metatranscriptome	256	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100015072	F002715	GGA	MPEHELQSVKLEVGLLKNEVEVRGRQIETLLQKLDLTTDKLQQLTVQIIKLNTRQEDYLRNSSSMTDEFKILHTRIGDLHDKQLAANKEIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISIFLKD
Ga0310121_1000150727	F015261	AGGAG	MPVNIVWEDGDATISILCDGCDKEYEILSKDTAGLEMCPFCGHYLEVESETGEVDETEEDSWD
Ga0310121_100015075	F000245	GGAGG	MKTFTRFKESKLDDKLDKLVSNEIKKRKLAKFPVNATDDIKMRMKPNKPAFKFPSPSSDMMIHVFLRPMKGKKGMMAFNYQLEDK
Ga0310121_100015076	F006919	GAG	MKSFIQHLREFASYSTSDLVFMNNGQGSASSGLMIPLSGPMFKRIWPDTIRTTVFHVLSAEDLYKLKKLEGGKKTISAFFTMMSRYLEGGIAAGGGVVAEMEADVIVSARDDIMSQVDNKGRRWVEMSWFENAQSYGTGPAFGKVERELNDLIRKLVLKHLEPILGNRARTEHEYVLWGNMKRELKDNKKLSLVIKDYFDGVEKIIKDNKEVMGSIFYGYAKSKRMTDNAWDEQVVNNIEITKLHYIPREEEVEDEEQQENIDAFVAKYKIPRKRWEYSSELEIYTREVTQAEVRTMGK