Scaffold Ga0310121_10001499

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10001499
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23764
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (47.37%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F031648	Metagenome	182	Y
F051207	Metagenome / Metatranscriptome	144	Y
F064801	Metagenome / Metatranscriptome	128	Y
F066856	Metagenome	126	Y
F073660	Metagenome / Metatranscriptome	120	N
F084350	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_1000149912	F066856	GAGG	VEVMVELEAEDFNEIFDWFTLAFAKKSAEDITKQAKKTFWKLKFLTEDKIRELEGFDD
Ga0310121_1000149914	F064801	N/A	MGVIDRVKGIFNFKSKSYTESTVRPSIAQPYMATDTGAKLPIFPFPLIMIYELADNIDALRIPIETVNREMFKNGFEIVEMWKFKCANCSKEFQYAPLAGDTKDAQPHSTNEDNESIVGSTTSSKALKASKDKPQFPVRQPGDKQLHPEGPLQCDTCGSTDLLRPAPENRKVLEDLLNKPVNDNEQSLEDITRMLERDLEIADNAYLLVLKNYFIDDSTGEIIPEKSEIKELIRIDPPQVAMIADSDGRVGYDDKHNPVYVCPKFEHRAKRLVSDRCDMCGTKALKAVVEVNSVYSIGIPQPKRVIYGEGEIIWRSGKYRPGLLYGYSPIYAVWSKVMSLSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDALEQKATEDPYMIHPLLVESDKPGGKNMAQWLDFTGSLKELEFIAVRKELRMIIGAIYGVLPLYFGELPTGWSQEGLQVTITNRAIKWGQDILLKSFLKKLAFMSGVTDWELRLKSGEETDRLRDLQIQGVEIENMKSLQGLGFEIARTHTGEFKVSKDPVITTAEMIGMSEDPEEKPEGLKPGGRGRGTSAPKEDQQRFEGEPQHKLPSKVGGIAGGHPASGHGTSLSRKNFPDGITPSNFKVVKSTMQDAVDFGWTKKKTIEMLRKNAIMTVRNARELVKNEFQGARRWEDEEES
Ga0310121_1000149916	F001235	GAG	MATKLNVDTGGEYIGKKLWEKHQGDEYTHVNHYKEAVCINCFKKDAAAATIVMICGDCAGKRGREPLLAKISDKFYGLCYFCSEYKFNLEEINARFCQKCHRKIADVTKAYNKAGGFMYTDPFWKRMRKKNGKDWKEIFTKNLGNKR
Ga0310121_1000149920	F051207	N/A	MASSIYIYTDKKDYDNLYKGKTDAWTFQTHIIDMFIKPTVSGYDVYDCHENRLWVVTNVTKLKERPSLQRTIVHFTNGSAIDYIEGDELLIEKENIVYNPKTNQLEFFPRRLRKPLMSIRVDKVIGGRPDKKTKINFKKKFYDITNNRLNLFV
Ga0310121_1000149928	F031648	N/A	MVELNHNVVSFNADTLIKGSHGVVVAVFCSKKGSSGAKCELRNGVNASATPIEFTVFGEIEGNYQNIHRRFESGIFADITGSAEWTVVFK
Ga0310121_1000149931	F084350	GGAGG	MAIATYDVIDDVISMLKTKWNSSSGGQIPRIERIWDEKTIGFGDMGIKKGIILIEPTNESIKYFSLGGTNHLHGVDLTLDIRSYQSLDRHAELVKEVVRIIKDQITRTGSVDLRIVGTEPLSRLYRNMFRHMVRITYRKIDP
Ga0310121_1000149933	F073660	N/A	MGLKTFTIDFKGVAAEIEYEDDMPFGKFEEIIKKCANFQEGTNPVTNVQTYRKEIMLNTLKKAPFEISEDGLNSLGYKEVTSIAEKILAAYPLGNYLNQMMKPFEDSINKIS