Scaffold Ga0310121_10000002

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10000002
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 239049
• Total Scaffold Genes: 302
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 201 (66.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002348	Metagenome / Metatranscriptome	568	Y
F034216	Metagenome	175	Y
F041248	Metagenome / Metatranscriptome	160	Y
F082824	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_10000002182	F002348	GGA	MEWMKLGGWLLSLTTILIGAYFIWPHMHTSLLGIVLIYLGVRIFNFSTFDEYKEKRMKILKSFRKW
Ga0310121_10000002191	F041248	GAGG	MKQHGKQARQEGAIKRTEASILVYEEKLKSCKDDNEKKLLKKKIERAQTTIKNTKII
Ga0310121_10000002201	F034216	N/A	MNEENDSMYGFLFMVLLVIWTASAWGDPDLIDALIYYLSDGYYKS
Ga0310121_1000000263	F082824	GGAG	MKSFKVFLERLMTSKQAVTQMNHYWKDLDHIASDDRKKKSMESRFGIKNIKLDTRGNIISFDEH