Scaffold Ga0310122_10160890

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10160890
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1069
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049037	Metagenome / Metatranscriptome	147	N
F060975	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_101608901	F049037	N/A	DFKLFYDTGKITYHDRSPNWYIDMPPLSITVRELSERCGFGKETNKLKHWLGLRVYKLIEDPLGFIFLRHLDDKIEDLHEGKSSKRLRYAKAACSQVVLEAKVRESTARSQDNVGAVVRREMGRTITTVRSEEDSSEEKHKKWVKLSETIW
Ga0310122_101608902	F060975	AGGAG	MGKTIRNNMVAKHSEKFNKPKTIRDKKKDYYRPDVKRNFEEAIEDLDFDEHNKKDAIIIQYQDELARSQEDGWPYED