Scaffold Ga0310122_10081639

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10081639
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1646
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera gargensis → Candidatus Nitrososphaera gargensis Ga9.2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040140	Metagenome	162	N
F068933	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_100816393	F040140	GAG	MALECQALKFSEFGPKHEDTGFDGSSHWKVLHDEVKSIECDFCKEKGIKLMQGLHDSVNAHLGKELQHPGDMDFLLKHVAWSAEQQGSGLRCYKCQN
Ga0310122_100816394	F068933	AGG	MSKLDLLKQLHLELLRPRKMPGMKGTIGRPSDLIPTYAAGKLKGYWKNVKHKPATGFEVSKRNKFKE