Scaffold Ga0310122_10067898

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10067898
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1850
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005832	Metagenome / Metatranscriptome	389	Y
F070548	Metagenome	123	Y
F089043	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_100678981	F070548	AGGA	MANWNSSELQTPEPIKKIGQNAQNVINNLDILLKLVKAGADVAKLFLLLSNPAGAIIKLAANEIIKLCNDFKEIGVFYLFINPNDEGYGGQTSREFGLAIKQDKNGLYQFKPSTYQIESFPSITTVVG
Ga0310122_100678982	F005832	GGTGG	VSKEGIWQDSDGMKDSEMVEKWTKTLHTVEYAVEQLKHQKTALIKKREDIVNSKENKNG
Ga0310122_100678984	F089043	N/A	GKMETEDFVRTVTFPDSGLNELDSYFPKFKHARDYALNRVKTDGTITQSEDVVTLIGADVTNHLVLENEDTLFTENHSNTAASEMGYFIIGLEDGTKTFPTKYAENLPIPMARFKSLKYQNGFSTNVSYATSNSEFIVQSNAEISFTEGTVDGETYELTYTDTSWPTTNASSYWFMNNIDNAPVVDDQSNILLFKTTSENTNFKVHFTIRAQKVNKHMGVYTGSQGTSTAASVLNTIDGWGDAFETGTGNYYDGYFYVTIYNSTDSDRDDQVVIFSDQNNASSTTLDFNGNAFKHRDDPDDPDTEISILNEEALTNAYSNGDFTLLTSI