Scaffold Ga0310122_10060367

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10060367
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1993
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F056907	Metagenome	137	N
F074138	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_100603672	F074138	GGAGG	MDWNQLYIHPSDDTTDDDIRDFVEWVSRKAERLGFRVELKRHQKVESTSSETVSHNPLDKSNEKY
Ga0310122_100603673	F056907	N/A	MSGNAYYIPGDTGVRVKIPTGEYEAIITSLDVVQNVKCGKFIADIFKPGYKIQHRDYIGTDVKDNGIFRYKEKVGYEFKPSRNWGFAKFCGILKLEQKDGDRISLPYLKFDMIDGLRVVVEINYKNFVNESGNPVRYPVGTLKKKVGEVPF
Ga0310122_100603674	F021867	N/A	VAELKEYINKEDNIMDNNVEQVDWDKVNRGKVRYGFALELYKKGGELTPSGMGRIEAFVDFVMGDMADEPAEEKRQSKLMSEGECKEIIKTESEGSKAFVKAMVHIDASGLQDDDLEKVLQALKTGKITIDNLQASLDKIYSIKQSYK