Scaffold Ga0310122_10034629

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10034629
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2812
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F021863	Metagenome / Metatranscriptome	217	Y
F033048	Metagenome / Metatranscriptome	178	Y
F042931	Metagenome	157	N
F081450	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_1003462910	F042931	AGGAGG	MMNREEFYISDWDMMMKIWPNCPVDGCKNKINLNLNTGKCFPHSEGSYQWKNFKILFKNTFINRPKLLWRKMRGPIT
Ga0310122_1003462911	F033048	GAGG	MIDKTIKLTGEYPSDFKPTVPVQEIQQYFDAYSFHDGRMIGGSKMDYHEKHPDDLIIFNANVLMPGYGKVWYGDLNLTEDYLV
Ga0310122_100346293	F021863	AGGAG	MAKKKKDIPFHIAHNYKQYELKDGTKFWAKDEENAKLYRKKVEGK
Ga0310122_100346295	F003091	AGGAG	MTMLPRKPITKPGEGKVREKHLSREYYLEERYQISVGLKGPKRLEGEEFEDYKLRMKAENGLLHEYLRGVWIKNEAD
Ga0310122_100346298	F081450	AGG	MTEFEEKSCKVLGVILFLLVVMTWLQISGCYSPPQPEMEGEPIPDYIDEVEIGNLA