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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031800 Open in IMG/M |
| Scaffold ID | Ga0310122_10033204 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2886 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Western Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 74.6947 | Long. (o) | -146.6612 | Alt. (m) | Depth (m) | 3678 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F045805 | Metagenome / Metatranscriptome | 152 | Y |
| F077398 | Metagenome / Metatranscriptome | 117 | N |
| F097505 | Metagenome / Metatranscriptome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310122_100332044 | F097505 | N/A | MDWKIARKRMHCDCSIHDVVSSVLEYLIITPMFAIAYLAVTVPWMLFVIKLDGEQFTDFIWQSVLVDLIVAYPVTKLIMKLRPRIEKITSLRH |
| Ga0310122_100332046 | F077398 | AGGAGG | MTVKKKIEYKEITKQTVQVKEGKVDVYTKAYNDTIKRAGSVYSADYKLIDETIEDIKKMSRKVSTNDYSANNVYIILQDALKKVRLAEA |
| Ga0310122_100332047 | F045805 | N/A | IMEVNSVYSIGIPQPKRVIYGEGEVIWKAGKYKPGLIYGYSPIYSVWSKAMSLTHMDEYIRKYFDKMRPPRGMLIIASRNYETFRKSWDMLEQKATEDPYMIHPLLVESERGAKNMAQWIDFTGSLKELEFMALRKELRQIIGAVYGVLPLYFGEMPSGWSQEGLQVTITNRAVTWGQDILRKSFYNKISHLLGVDDWELRLKAGEETDKLRELQTQSTEIQNMAAMQAMGFEVKRTHTGEFKVSKDPIINPMMMAQEESPKEKPQRSRGPAMGQKKENKQSFQGEPKRGRPSDPGGTAQGSPSSGPGTSMSKKGYQSGITPDNFSVVKSILQTSVDFGWKKTQTVDELRTKAFMTVRDAREVVNNELESTRRWDDDSEKED |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |