Scaffold Ga0310122_10031951

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10031951
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2956
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007837	Metagenome / Metatranscriptome	344	Y
F013596	Metagenome / Metatranscriptome	270	Y
F016759	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_100319511	F013596	AGG	MVELSLFLSILAVTLPICLTGVFVAKLYRKNADLDPKITNKLRKQQEDYIFEVERKNRSLQNKLNSMQKGPELSEIGDLDGVIPELLGQVEGILPKWAGKILKSNPDIVNGVIKYAKDNPDKAKELITRFVKIKPKAGTANVDTLPGL
Ga0310122_100319515	F016759	AGGTGG	MSMEPIQRRMQNPLVGALNVPINLVDQVTGLTFIQLSQNNTILDAYNAVDPAAAADTYEYGLNKNSISTGRTFFSTAMSTASAGRAAVGPIRLAPGQLQMTGTPTGAAFPALDQNIVIKFSNGF
Ga0310122_100319516	F007837	AGG	LVTGLATQPLISARNLDLKLRTVVDLKTAAAQVIINYPASHLGLSNSVLIDNQDAVNAVTVRFNLQINTTTIAGGNFRTFNDAWIEQINLTGPSTNVQITSQVAGLDSISPYGGGVTN